rs6412550 SNP Detail

Summary

• ID
  rs6412550
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141166496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGTACAA CCACAAGTCT
  CTTTATGAAG CCAAAACATA AGTAAGTTTT TAGGTGTAAA ACATGACTGC GGAAATCATT
  CTGGCACTAA GAAATATCAA CTGTGCTTCT TGGACAGGCT GTTTTCTTCT GAGTAAAAAT
  AATATATCAT AGGTTTCTAT ATGACCCTCA AAATTCATGT GTTGGAGCTG TGTTCCCTCC
  M
  CACTGCAATA GAATTGAGTC ATGGGTGTCT TCTAAGAGGT AACTGAGTCT TGGTACACTA
  TCCTCATAAA TTCATTAAGT TATCATGGGA GTAGATGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGA ATGGATGAAT GGCCCATCTA CACTTGCTCT ATCAAACCAT CTTGTTTTTT
  TTTTGTTTTG TTTTTTGTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8818767	WI_WGS_3_141969607	WI	MOUSE	f	SNP	A	C
ss320992348	CHEV_3_141123699	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6412550					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141166496 () rs orientation: forward

Symbol	Name	Function Class
Gm15688	predicted gene 15688	within coordinates
Gm66152	predicted gene, 66152	within coordinates
Rr586318	regulatory region 586318	1690 bp proximal