rs6412046 SNP Detail

Summary

• ID
  rs6412046
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141166444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGCTAATA TTGATAATGG
  TAAAAACACT GTAAGTCAGA GCTTCCAAGG CTTGCAGTAC AACCACAAGT CTCTTTATGA
  AGCCAAAACA TAAGTAAGTT TTTAGGTGTA AAACATGACT GCGGAAATCA TTCTGGCACT
  AAGAAATATC AACTGTGCTT CTTGGACAGG CTGTTTTCTT CTGAGTAAAA ATAATATATC
  W
  TAGGTTTCTA TATGACCCTC AAAATTCATG TGTTGGAGCT GTGTTCCCTC CACACTGCAA
  TAGAATTGAG TCATGGGTGT CTTCTAAGAG GTAACTGAGT CTTGGTACAC TATCCTCATA
  AATTCATTAA GTTATCATGG GAGTAGATGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GAATGGATGA ATGGCCCATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8818263	WI_WGS_3_141969555	WI	MOUSE	f	SNP	A	T
ss320992347	CHEV_3_141123647	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6412046					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141166444 () rs orientation: forward

Symbol	Name	Function Class
Gm15688	predicted gene 15688	within coordinates
Gm66152	predicted gene, 66152	within coordinates
Rr586318	regulatory region 586318	1742 bp proximal