rs6412045 SNP Detail

Summary

• ID
  rs6412045
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141166443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGCTAAT ATTGATAATG
  GTAAAAACAC TGTAAGTCAG AGCTTCCAAG GCTTGCAGTA CAACCACAAG TCTCTTTATG
  AAGCCAAAAC ATAAGTAAGT TTTTAGGTGT AAAACATGAC TGCGGAAATC ATTCTGGCAC
  TAAGAAATAT CAACTGTGCT TCTTGGACAG GCTGTTTTCT TCTGAGTAAA AATAATATAT
  M
  ATAGGTTTCT ATATGACCCT CAAAATTCAT GTGTTGGAGC TGTGTTCCCT CCACACTGCA
  ATAGAATTGA GTCATGGGTG TCTTCTAAGA GGTAACTGAG TCTTGGTACA CTATCCTCAT
  AAATTCATTA AGTTATCATG GGAGTAGATG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGAATGGATG AATGGCCCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8818262	WI_WGS_3_141969554	WI	MOUSE	f	SNP	C	A
ss320992346	CHEV_3_141123646	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6412045					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141166443 () rs orientation: forward

Symbol	Name	Function Class
Gm15688	predicted gene 15688	within coordinates
Gm66152	predicted gene, 66152	within coordinates
Rr586318	regulatory region 586318	1743 bp proximal