rs6411592 SNP Detail

Summary

• ID
  rs6411592
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107050273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAACTTAC TGATTTATTG
  TTGAGTAGGA ATGAGTAGAT GATGCTGACA TAGACTATTT TAATTAGGAT AGAATAAAAC
  AAATTCTGTT ACTCAAGTTC ACATGTAATT CAACAGGAAA CTTCAGTATC AAAAACATTT
  GAGCCAGGCA TGATAACACA CACCTTTAGT TCCAGCATTT AGGAGGCAGG GGCAGGCAGA
  W
  GGCTGTGAGT TCAAGGTTAC CCTGGGCTAT AAAACAACAT TTACAAGTAA AGCAGGAAGT
  CCATAATACG GTAGGATGCT TACTTGGTTT TGATGTGCCA AAGGAATTAA CACGTAGAAT
  GTGTCAGCTT ACACTTAGAA AGCTCCTTAG AGGATATGCA TATCTAGAAT AGAGTGAGTG
  GCATTTAGGA TAATCATTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8817809	WI_WGS_4_104916651	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6411592					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107050273 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr596946	regulatory region 596946			1139 bp proximal
Tmem59	transmembrane protein 59			Intron
				Noncoding-Transcript-Variant