rs6411005 SNP Detail

Summary

• ID
  rs6411005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30516351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTGCGGA GACCAGAAGA
  GGGCATTGGA TCCCCCTGGA GCTGGAGTTA CAAAGGGCTC TGACACTTAT GTGTGTTGAT
  GCTAGGAGCC AAACCTAGGT CCTCTGCAAG ACCAGCAAGT AATCTTTACT GCTGATCCAT
  CTCTCCAACC CCAAGTCTAG ATTTTAAACT AAAAGACAAG GACAGAGGCT CCCAGGTTCT
  Y
  CCTTCTTGGT ACCTGACTTG CACATGTAGT GCCCTGGGTG TTCAGATCTC AGAACTAAAC
  ACATCCTCCC ACAAAGACAA ATCAAAAAGA GCACTACGGA CTGTAAGATG TACAGTTTTC
  ATTTTTCTGT ATGTGTCCAT TATAACAGCC TTATTACTCA CTTGCATAAT GAGTAACTGT
  GTGTTTGTGT GAATGTTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8817222	WI_WGS_3_30275671	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6411005					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30516351 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574769	regulatory region 574769			848 bp distal
Rr574770	regulatory region 574770			171 bp distal
Rr574771	regulatory region 574771			547 bp proximal