rs6410481 SNP Detail

Summary

• ID
  rs6410481
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107050099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGGTGGA GGTCCAATAA
  GCCTAGTTGT AACACTACCT TGAAAGTATG AGTTCCTTAT TCTCTTTTTA TTTCCATACT
  AGATATGAAT TATAAATCAT AGGAACATCA AACATCAGGC AAAAGCAGTT TGCCTTTGAT
  AATGTCTACC TATCATATTT TACTTATTGA TACAGTTAAC TTACTGATTT ATTGTTGAGT
  R
  GGAATGAGTA GATGATGCTG ACATAGACTA TTTTAATTAG GATAGAATAA AACAAATTCT
  GTTACTCAAG TTCACATGTA ATTCAACAGG AAACTTCAGT ATCAAAAACA TTTGAGCCAG
  GCATGATAAC ACACACCTTT AGTTCCAGCA TTTAGGAGGC AGGGGCAGGC AGAAGGCTGT
  GAGTTCAAGG TTACCCTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8816698	WI_WGS_4_104916477	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6410481					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107050099 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr596946	regulatory region 596946			1313 bp proximal
Tmem59	transmembrane protein 59			Intron
				Noncoding-Transcript-Variant