rs6410318 SNP Detail

Summary

• ID
  rs6410318
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30516194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATTAATA CATAACTGAA
  GCCCAATATA ATGTTTGAGG ATGTGGCATT TACCTTTCAG GATTAGTGTT CCCCTCTCAT
  AAGAAAGTCT AGACTTTAAA GATTTACCTA CTTTTATTCT ATGAGTGTAT TTTGCCTTTG
  TGTATGAATG TACGTGGTAC CTGCGGAGAC CAGAAGAGGG CATTGGATCC CCCTGGAGCT
  R
  GAGTTACAAA GGGCTCTGAC ACTTATGTGT GTTGATGCTA GGAGCCAAAC CTAGGTCCTC
  TGCAAGACCA GCAAGTAATC TTTACTGCTG ATCCATCTCT CCAACCCCAA GTCTAGATTT
  TAAACTAAAA GACAAGGACA GAGGCTCCCA GGTTCTCCCT TCTTGGTACC TGACTTGCAC
  ATGTAGTGCC CTGGGTGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8816535	WI_WGS_3_30275514	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6410318					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30516194 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574769	regulatory region 574769			691 bp distal
Rr574770	regulatory region 574770			14 bp distal
Rr574771	regulatory region 574771			704 bp proximal