rs6410102 SNP Detail

Summary

• ID
  rs6410102
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89236176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCTTCTG GGTGGGGTAC
  TACTCATGTG CTCCCCAGAG CTTGGCCTCA TTCAGATCCT CACACAGAGT GGAGTCCATC
  TGGATGGCTG GAGTACTACG CTGGCCACAG GATATCATGG CAATGGGAAC CTGGAAGAGA
  GGCCTGGGGT AGAGCGGCGG TGCTGTTATA AGAGGTTCAG AGCTTACTAA AGGGACCCAG
  R
  AAGCCAGGGA TGCAGCATGC TGGAATCAAG CTGCCCACTT CTGCAAAAGC AGCTGTCTAG
  GTGTCCAGCA TCCAGCATTA GGGCCTGCTC TTATCTAAGA TGAGCTACCC TACCTGGACA
  GGTCTGAGTT CCATCGCCAT CCAACCTGCC TTCTGTCAGG GTTAGTACAT GGCAGGGCTG
  CTCCTGAGTC CCCCAGGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8816319	WI_WGS_6_90107766	WI	MOUSE	f	SNP							A	G
ss47999422	NES11912686	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A			A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6410102					SNP	A	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999422	NES11912686	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89236176 () rs orientation: forward

Symbol	Name	Function Class
Gm44204	predicted gene, 44204	58 bp upstream
Gm66553	predicted gene, 66553	1385 bp downstream
Rr634088	regulatory region 634088	790 bp distal
Tssr62001	transcription start site region 62001	917 bp upstream