rs6410062 SNP Detail

Summary

• ID
  rs6410062
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89236150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGGGGTT CTGAGACAGA
  CACTGCTCAT CTTCTGGGTG GGGTACTACT CATGTGCTCC CCAGAGCTTG GCCTCATTCA
  GATCCTCACA CAGAGTGGAG TCCATCTGGA TGGCTGGAGT ACTACGCTGG CCACAGGATA
  TCATGGCAAT GGGAACCTGG AAGAGAGGCC TGGGGTAGAG CGGCGGTGCT GTTATAAGAG
  K
  TTCAGAGCTT ACTAAAGGGA CCCAGAAAGC CAGGGATGCA GCATGCTGGA ATCAAGCTGC
  CCACTTCTGC AAAAGCAGCT GTCTAGGTGT CCAGCATCCA GCATTAGGGC CTGCTCTTAT
  CTAAGATGAG CTACCCTACC TGGACAGGTC TGAGTTCCAT CGCCATCCAA CCTGCCTTCT
  GTCAGGGTTA GTACATGGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8816279	WI_WGS_6_90107740	WI	MOUSE	f	SNP							G	T
ss47999420	NES11912684	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G			G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6410062					SNP	G	G	G	G	G	G	G	T	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999420	NES11912684	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89236150 () rs orientation: forward

Symbol	Name	Function Class
Gm44204	predicted gene, 44204	32 bp upstream
Gm66553	predicted gene, 66553	1359 bp downstream
Rr634088	regulatory region 634088	764 bp distal
Tssr62001	transcription start site region 62001	891 bp upstream