rs6409909 SNP Detail

Summary

• ID
  rs6409909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107049988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGACTTCC AGTGCACTGG
  GTCTGGTTCC ATCTACCTGG GGGTTTGCAT TTCTGATGAG TTCCACATCC TGGTAATGCT
  GCTAGTATTG AATGTGAACT AACAAAGTGT GGAGGGGTGG AGGTCCAATA AGCCTAGTTG
  TAACACTACC TTGAAAGTAT GAGTTCCTTA TTCTCTTTTT ATTTCCATAC TAGATATGAA
  Y
  TATAAATCAT AGGAACATCA AACATCAGGC AAAAGCAGTT TGCCTTTGAT AATGTCTACC
  TATCATATTT TACTTATTGA TACAGTTAAC TTACTGATTT ATTGTTGAGT AGGAATGAGT
  AGATGATGCT GACATAGACT ATTTTAATTA GGATAGAATA AAACAAATTC TGTTACTCAA
  GTTCACATGT AATTCAACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8816125	WI_WGS_4_104916366	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6409909					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107049988 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr596946	regulatory region 596946			1424 bp proximal
Tmem59	transmembrane protein 59			Intron
				Noncoding-Transcript-Variant