rs6409841 SNP Detail

Summary

• ID
  rs6409841
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30516131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGATGCC AGGAACACCA
  TAGAAAGTTG TGTTATTTAT GTTTTTATTT TATTTTGTAC CCAAATATTA ATACATAACT
  GAAGCCCAAT ATAATGTTTG AGGATGTGGC ATTTACCTTT CAGGATTAGT GTTCCCCTCT
  CATAAGAAAG TCTAGACTTT AAAGATTTAC CTACTTTTAT TCTATGAGTG TATTTTGCCT
  K
  TGTGTATGAA TGTACGTGGT ACCTGCGGAG ACCAGAAGAG GGCATTGGAT CCCCCTGGAG
  CTGGAGTTAC AAAGGGCTCT GACACTTATG TGTGTTGATG CTAGGAGCCA AACCTAGGTC
  CTCTGCAAGA CCAGCAAGTA ATCTTTACTG CTGATCCATC TCTCCAACCC CAAGTCTAGA
  TTTTAAACTA AAAGACAAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8816057	WI_WGS_3_30275451	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6409841					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30516131 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574769	regulatory region 574769			628 bp distal
Rr574770	regulatory region 574770			28 bp proximal
Rr574771	regulatory region 574771			767 bp proximal