rs6409178 SNP Detail

Summary

• ID
  rs6409178
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5509202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACAAAAA AGAAGCTGAA
  CTCCAGTGCC AGCCATAGGG ATATATCTCC CAGAAAGAGA TTTCGCACAG TTCTGAAGAG
  GTTTTTGGAC CACCTGGCAG GCAAGACAGG GGCTGGCTCA AAATGAGGAC CCACCCAAAC
  TTGATTATGC TCTTATTTCT GTTTATACCC AGAGATAGAC TTGGGAGGGG GTACTAGACT
  K
  CTTGACAATG TGGGCAATGG AATACGTCTT CCTCTGTTTT TCTTGTCTCT GTAATTACCC
  TGTTGAGGAT TGTGGAGGAG CCTGGTTTGT TAGGGCTTCC AGGGCCCAGG CTCTGACCCT
  AACAACTCTT CTAACATCTT CAATTTTAAT ATCACCACAC AGACATACAG TTCTTTCCTC
  TGCTCTAAAA ATAAATTAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8815394	WI_WGS_6_5234081	WI	MOUSE	f	SNP	G	T
ss321729362	CHEV_6_5459202	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6409178					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5509202 () rs orientation: forward

Symbol	Name	Function Class
Rr406959	regulatory region 406959	within coordinates
Rr626154	regulatory region 626154	992 bp distal
Rr626155	regulatory region 626155	30 bp proximal
Tssr1775	transcription start site region 1775	1935 bp upstream
Tssr54862	transcription start site region 54862	1946 bp upstream