rs6409159 SNP Detail

Summary

• ID
  rs6409159
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5509193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCGGTTG GGACAAAAAA
  GAAGCTGAAC TCCAGTGCCA GCCATAGGGA TATATCTCCC AGAAAGAGAT TTCGCACAGT
  TCTGAAGAGG TTTTTGGACC ACCTGGCAGG CAAGACAGGG GCTGGCTCAA AATGAGGACC
  CACCCAAACT TGATTATGCT CTTATTTCTG TTTATACCCA GAGATAGACT TGGGAGGGGG
  K
  ACTAGACTGC TTGACAATGT GGGCAATGGA ATACGTCTTC CTCTGTTTTT CTTGTCTCTG
  TAATTACCCT GTTGAGGATT GTGGAGGAGC CTGGTTTGTT AGGGCTTCCA GGGCCCAGGC
  TCTGACCCTA ACAACTCTTC TAACATCTTC AATTTTAATA TCACCACACA GACATACAGT
  TCTTTCCTCT GCTCTAAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8815375	WI_WGS_6_5234072	WI	MOUSE	f	SNP	T	G
ss321729361	CHEV_6_5459193	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6409159					SNP	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5509193 () rs orientation: forward

Symbol	Name	Function Class
Rr406959	regulatory region 406959	within coordinates
Rr626154	regulatory region 626154	983 bp distal
Rr626155	regulatory region 626155	39 bp proximal
Tssr1775	transcription start site region 1775	1944 bp upstream
Tssr54862	transcription start site region 54862	1955 bp upstream