rs6409156 SNP Detail

Summary

• ID
  rs6409156
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5509191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAATCGGT TGGGACAAAA
  AAGAAGCTGA ACTCCAGTGC CAGCCATAGG GATATATCTC CCAGAAAGAG ATTTCGCACA
  GTTCTGAAGA GGTTTTTGGA CCACCTGGCA GGCAAGACAG GGGCTGGCTC AAAATGAGGA
  CCCACCCAAA CTTGATTATG CTCTTATTTC TGTTTATACC CAGAGATAGA CTTGGGAGGG
  R
  GTACTAGACT GCTTGACAAT GTGGGCAATG GAATACGTCT TCCTCTGTTT TTCTTGTCTC
  TGTAATTACC CTGTTGAGGA TTGTGGAGGA GCCTGGTTTG TTAGGGCTTC CAGGGCCCAG
  GCTCTGACCC TAACAACTCT TCTAACATCT TCAATTTTAA TATCACCACA CAGACATACA
  GTTCTTTCCT CTGCTCTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8815372	WI_WGS_6_5234070	WI	MOUSE	f	SNP	G	A
ss321729360	CHEV_6_5459191	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6409156					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5509191 () rs orientation: forward

Symbol	Name	Function Class
Rr406959	regulatory region 406959	within coordinates
Rr626154	regulatory region 626154	981 bp distal
Rr626155	regulatory region 626155	41 bp proximal
Tssr1775	transcription start site region 1775	1946 bp upstream
Tssr54862	transcription start site region 54862	1957 bp upstream