rs6409122 SNP Detail

Summary

• ID
  rs6409122
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5509177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGGATTT CTGCTGGAAT
  CGGTTGGGAC AAAAAAGAAG CTGAACTCCA GTGCCAGCCA TAGGGATATA TCTCCCAGAA
  AGAGATTTCG CACAGTTCTG AAGAGGTTTT TGGACCACCT GGCAGGCAAG ACAGGGGCTG
  GCTCAAAATG AGGACCCACC CAAACTTGAT TATGCTCTTA TTTCTGTTTA TACCCAGAGA
  K
  AGACTTGGGA GGGGGTACTA GACTGCTTGA CAATGTGGGC AATGGAATAC GTCTTCCTCT
  GTTTTTCTTG TCTCTGTAAT TACCCTGTTG AGGATTGTGG AGGAGCCTGG TTTGTTAGGG
  CTTCCAGGGC CCAGGCTCTG ACCCTAACAA CTCTTCTAAC ATCTTCAATT TTAATATCAC
  CACACAGACA TACAGTTCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8815338	WI_WGS_6_5234056	WI	MOUSE	f	SNP	T	G
ss321729359	CHEV_6_5459177	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6409122					SNP	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5509177 () rs orientation: forward

Symbol	Name	Function Class
Rr406959	regulatory region 406959	within coordinates
Rr626154	regulatory region 626154	967 bp distal
Rr626155	regulatory region 626155	55 bp proximal
Tssr1775	transcription start site region 1775	1960 bp upstream
Tssr54862	transcription start site region 54862	1971 bp upstream