rs6408801 SNP Detail

Summary

• ID
  rs6408801
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103901600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCTTCAA GCTCCATTGT
  GCGCTGTATC GCTAGCTAGG CTGTGTCTTT GTCCTGGTCA CCTAACCCCT GTTCCCATGT
  GCTTCATCTT AAAATATGGA GCAATGTGAA GGATGGATTG GGGGCTTTCC CTGGCTCGGA
  TTCTCTGGAG TTAAGATCCA TCCTCTGCCT TTCACCTGTT TTCTAGATGA ACAGAAAAAG
  R
  GGACCTGAAG TGCATGAAGA ATTATCCTAG TAGGATTTGA CTAGGCAGTT AATTAACAAA
  ACAAAGCAGT GACATTCTAC ATCATATTAG TTGTGAATTA GTGCTGCAGA TTGCTACCTC
  ATCTATAAGA CAGATTCCAT TACAATCCTT CTGGGGCCCA TAGAATCAGT AACTTAACAG
  TTTTCAAATT TCTCGAACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8815016	WI_WGS_4_101757739	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6408801					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103901600 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dab1	disabled 1			Intron
				Noncoding-Transcript-Variant
Rr596428	regulatory region 596428			573 bp distal
Rr596429	regulatory region 596429			286 bp proximal