rs6408392 SNP Detail

Summary

• ID
  rs6408392
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131514222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATTCAGT GTCACAAGTC
  TGGGTCAGAA ACTAGGTTTA CGACAGGGCG TCCCGGATGT CTCTGCAGCT TCCTCTTTGC
  ATCAGCTGCC AGAATCCAGT CGACTAGGAC CAGATGGTTG CCAATCTGTG CAGCTGCTCA
  TCCAGGCCTT CTCCTCCTGG GATAGCTAGG GGCTTGGCTA ACCTGCAGCC TTCAGAAGAC
  S
  CTCACTGTAT CCTCCTCCAC CAGGAAAGGA AGACAGGTGG AAAGATGCCC TGCCTTATAA
  AGACAGGATC TCCACACCTG CATTTAAACC GATGGGCTGA ATTTATTGGA TGTTGAGAGC
  ATGAAATCGT GAACCAGAGC AGATGAGCAC TGTTCCTGCA GGTTCCAATG CTCCCTTTTC
  TTCCTGGCTC ACTTTCTGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8814606	WI_WGS_3_132294892	WI	MOUSE	f	SNP							G		C
ss51638723	NES14654041	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		C		G	G	G	C	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6408392					SNP	G	G	G	G	G	G	G	C	C	G	G	G	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51638723	NES14654041	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131514222 () rs orientation: forward

Symbol	Name	Function Class
Rr585382	regulatory region 585382	within coordinates