rs6408133 SNP Detail

Summary

• ID
  rs6408133
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67887090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACCTCAG AGATGACACG
  GAAAGAGCTT AATGGTTCCA TTGAGGCAGG GAGCAGCCAA AGGGGAGTAG CAGGATGGTT
  CATCTTCTTT TTATGATGAG TGATGAGCCT ATGAAACTCA TTTCTATTCA CCATGCCTGC
  AATATCTAAA GAACTTACAA GAGATGCCAA TTATTATCTG TTTTCTGTTC TGGGTTCCCA
  R
  AGATGTTAGG ATTTAGGTCA CTATGTTACT ATGTAAGAAA ATGTAGCAGA AGAACTTCCA
  TGGCTGGGGA TTTTTTTTTT TTTTTTTTTT TTTTTTGTCA TATAGTCACT ATAGTTACAA
  GACTTAAGAA CCAGATCTCC ATTCTTGCTT TGAAGAGTTT GTTAAGACGG ACTATCTGCC
  ATAGTGCCTC CTCCAGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8814347	WI_WGS_3_68577365	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6408133					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67887090 () rs orientation: forward

Symbol	Name	Function Class
Iqcj	IQ motif containing J	Intron
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577969	regulatory region 577969	437 bp proximal