rs6407847 SNP Detail

Summary

• ID
  rs6407847
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30068949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGG GAGGGAGATC TCACAGCAGT
  R
  GTAGGTAAGA CAGGGGAAAA ATCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ
ss8814061	WI_WGS_3_29827849	WI	MOUSE	f	SNP		A	G
ss134728240	ENSMUSSNP6032721	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ
rs6407847					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30068949 () rs orientation: forward

Symbol	Name	Function Class
D3Mit46	DNA segment, Chr 3, Massachusetts Institute of Technology 46	1196 bp distal
D3Mit46.1	DNA segment, Chr 3, Massachusetts Institute of Technology 46.1	1075 bp distal
D3Mit46.3	DNA segment, Chr 3, Massachusetts Institute of Technology 46.3	1325 bp distal
Mecom	MDS1 and EVI1 complex locus	Intron
Rr574702	regulatory region 574702	1655 bp distal
Rr574703	regulatory region 574703	1059 bp distal
Rr574704	regulatory region 574704	363 bp proximal
Rr574705	regulatory region 574705	628 bp proximal
Rr574706	regulatory region 574706	1831 bp proximal
Tssr32873	transcription start site region 32873	1889 bp upstream
Tssr32874	transcription start site region 32874	1780 bp upstream
Tssr32875	transcription start site region 32875	1764 bp upstream
Tssr32876	transcription start site region 32876	1651 bp upstream
Tssr32877	transcription start site region 32877	1626 bp upstream
Tssr32878	transcription start site region 32878	1554 bp upstream
Tssr32879	transcription start site region 32879	1540 bp upstream
Tssr32880	transcription start site region 32880	1460 bp upstream
Tssr32881	transcription start site region 32881	1431 bp upstream
Tssr32882	transcription start site region 32882	1401 bp upstream
Tssr32883	transcription start site region 32883	410 bp upstream