rs6407669 SNP Detail

Summary

• ID
  rs6407669
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103901388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGAGAGG AGGTTCAGGA
  AGCTGTGCAT GGTGATTGAA CGTGTTGAAT ATTGGCACAC ACAATAACAC AACTGCTAGG
  AAATTACCCA GTTGAATTCC AATCTTTTTG GAAGGTGTTT GCAAAATTGT AGGCATCCTG
  GTTAGTAAAG AAAAGGAGCG GAGCTTGGGG AGACCTTATG GGAAGAGTGG AGTAAGATGC
  R
  AGCCCTGCAT GTGAGCTTCA AGCTCCATTG TGCGCTGTAT CGCTAGCTAG GCTGTGTCTT
  TGTCCTGGTC ACCTAACCCC TGTTCCCATG TGCTTCATCT TAAAATATGG AGCAATGTGA
  AGGATGGATT GGGGGCTTTC CCTGGCTCGG ATTCTCTGGA GTTAAGATCC ATCCTCTGCC
  TTTCACCTGT TTTCTAGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss8813883	WI_WGS_4_101757527	WI	MOUSE	f	SNP	G	A
ss38301924	NES09510084	PERLEGEN	MM_PANEL2	f	SNP			G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs6407669					SNP	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38301924	NES09510084	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103901388 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dab1	disabled 1			Intron
				Noncoding-Transcript-Variant
Rr596428	regulatory region 596428			361 bp distal
Rr596429	regulatory region 596429			498 bp proximal