rs6407249 SNP Detail

Summary

• ID
  rs6407249
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30068813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATA GTGTCAGAAG ACAAGGAAGC
  R
  GGTGACAGTA AATGACTAGA GGTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8813462	WI_WGS_3_29827713	WI	MOUSE	f	SNP							A		G
ss45440708	mCV22689459	ABI	CRAMUS_MOUSE	f	SNP		G								A
ss46886419	NES10819066	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	G		G		A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6407249					SNP	A	G	A	A	A	G	A	G	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886419	NES10819066	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30068813 () rs orientation: forward

Symbol	Name	Function Class
D3Mit46	DNA segment, Chr 3, Massachusetts Institute of Technology 46	1060 bp distal
D3Mit46.1	DNA segment, Chr 3, Massachusetts Institute of Technology 46.1	939 bp distal
D3Mit46.3	DNA segment, Chr 3, Massachusetts Institute of Technology 46.3	1189 bp distal
Mecom	MDS1 and EVI1 complex locus	Intron
Rr574702	regulatory region 574702	1519 bp distal
Rr574703	regulatory region 574703	923 bp distal
Rr574704	regulatory region 574704	499 bp proximal
Rr574705	regulatory region 574705	764 bp proximal
Rr574706	regulatory region 574706	1967 bp proximal
Tssr32873	transcription start site region 32873	1753 bp upstream
Tssr32874	transcription start site region 32874	1644 bp upstream
Tssr32875	transcription start site region 32875	1628 bp upstream
Tssr32876	transcription start site region 32876	1515 bp upstream
Tssr32877	transcription start site region 32877	1490 bp upstream
Tssr32878	transcription start site region 32878	1418 bp upstream
Tssr32879	transcription start site region 32879	1404 bp upstream
Tssr32880	transcription start site region 32880	1324 bp upstream
Tssr32881	transcription start site region 32881	1295 bp upstream
Tssr32882	transcription start site region 32882	1265 bp upstream
Tssr32883	transcription start site region 32883	274 bp upstream