rs6407188 SNP Detail

Summary

• ID
  rs6407188
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103901314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAACCTT TTGTTTTTCA
  CTCATCCCCC TCTAAAAAAG CAAACCAAAA TCTTTATGTA CTTATTAATA TTGAGCCAGA
  GAGGAGGTTC AGGAAGCTGT GCATGGTGAT TGAACGTGTT GAATATTGGC ACACACAATA
  ACACAACTGC TAGGAAATTA CCCAGTTGAA TTCCAATCTT TTTGGAAGGT GTTTGCAAAA
  W
  TGTAGGCATC CTGGTTAGTA AAGAAAAGGA GCGGAGCTTG GGGAGACCTT ATGGGAAGAG
  TGGAGTAAGA TGCGAGCCCT GCATGTGAGC TTCAAGCTCC ATTGTGCGCT GTATCGCTAG
  CTAGGCTGTG TCTTTGTCCT GGTCACCTAA CCCCTGTTCC CATGTGCTTC ATCTTAAAAT
  ATGGAGCAAT GTGAAGGATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss8813401	WI_WGS_4_101757453	WI	MOUSE	f	SNP		T	A
ss38301926	NES09510082	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs6407188					SNP	T	T	A	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38301926	NES09510082	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103901314 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dab1	disabled 1			Intron
				Noncoding-Transcript-Variant
Rr596428	regulatory region 596428			287 bp distal
Rr596429	regulatory region 596429			572 bp proximal