rs6407104 SNP Detail

Summary

• ID
  rs6407104
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130731502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTACGACG CCCTAAGTTC CAACCAGAGA AAAGATCTAC
  CCCAGAGCTC TATGTGGCTG CTCTGTTCTT GTCTCTCAGC ACCGTGGAAT TATACTAATT
  M
  TTATCATCGT TTGTTTTACC TTTGTAATCA ATCCCATCCT CCTCTTCGTT CTGTTTGTTA
  GCTTGACTTA GTTCTACCAC CTTGAAAGTA AGTCTAACT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8813317	WI_WGS_3_131494132	WI	MOUSE	f	SNP			A	C
ss45500244	mCV23363382	ABI	CRAMUS_MOUSE	f	SNP	A	A	A		C
ss135902547	ENSMUSSNP860336	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6407104					SNP	A	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130731502 () rs orientation: forward

Symbol	Name	Function Class
2010110G14Rik	RIKEN cDNA 2010110G14 gene	516 bp upstream
Gm64594	predicted gene, 64594	947 bp downstream
Gm64601	predicted gene, 64601	1456 bp upstream
Rr367556	regulatory region 367556	611 bp downstream
Rr585240	regulatory region 585240	1110 bp distal
Rr585241	regulatory region 585241	563 bp distal
Tssr31681	transcription start site region 31681	1252 bp downstream