rs6407054 SNP Detail

Summary

• ID
  rs6407054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67886878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAAAATGC ACAACATTCT
  CGTGTGCGTG TGTGAATTTA GCATCAACTT ATTCTCTCAT TTCCTTGAGG TACCATAGCT
  TTCTCTTCAT TTGAAATAAA ATCTGTAGAA TTTCACATTT GCTGCAGTTC CTAATTACAG
  CTCTTCTTGA ATGACAGAAC AACGTGTCTT CTGTACGGTA GGGGCTGCTC AGGTGTCTTC
  Y
  GGGTGATGTT AATTACCTCA GAGATGACAC GGAAAGAGCT TAATGGTTCC ATTGAGGCAG
  GGAGCAGCCA AAGGGGAGTA GCAGGATGGT TCATCTTCTT TTTATGATGA GTGATGAGCC
  TATGAAACTC ATTTCTATTC ACCATGCCTG CAATATCTAA AGAACTTACA AGAGATGCCA
  ATTATTATCT GTTTTCTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8813267	WI_WGS_3_68577153	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6407054					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67886878 () rs orientation: forward

Symbol	Name	Function Class
Iqcj	IQ motif containing J	Intron
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577969	regulatory region 577969	649 bp proximal