rs6406798 SNP Detail

Summary

• ID
  rs6406798
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30068779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTA TTTTCCCCAA AATGCTGATC
  R
  AAAAACAAAA ATAGTGTCAG AAGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8813009	WI_WGS_3_29827679	WI	MOUSE	f	SNP							A		G
ss46886416	NES10819065	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	A	G		G		G	G	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6406798					SNP	A	G	G	A	A	G	A	G	G	G	G	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886416	NES10819065	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30068779 () rs orientation: forward

Symbol	Name	Function Class
D3Mit46	DNA segment, Chr 3, Massachusetts Institute of Technology 46	1026 bp distal
D3Mit46.1	DNA segment, Chr 3, Massachusetts Institute of Technology 46.1	905 bp distal
D3Mit46.3	DNA segment, Chr 3, Massachusetts Institute of Technology 46.3	1155 bp distal
Mecom	MDS1 and EVI1 complex locus	Intron
Rr574702	regulatory region 574702	1485 bp distal
Rr574703	regulatory region 574703	889 bp distal
Rr574704	regulatory region 574704	533 bp proximal
Rr574705	regulatory region 574705	798 bp proximal
Tssr32873	transcription start site region 32873	1719 bp upstream
Tssr32874	transcription start site region 32874	1610 bp upstream
Tssr32875	transcription start site region 32875	1594 bp upstream
Tssr32876	transcription start site region 32876	1481 bp upstream
Tssr32877	transcription start site region 32877	1456 bp upstream
Tssr32878	transcription start site region 32878	1384 bp upstream
Tssr32879	transcription start site region 32879	1370 bp upstream
Tssr32880	transcription start site region 32880	1290 bp upstream
Tssr32881	transcription start site region 32881	1261 bp upstream
Tssr32882	transcription start site region 32882	1231 bp upstream
Tssr32883	transcription start site region 32883	240 bp upstream