rs6406731 SNP Detail

Summary

• ID
  rs6406731
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131513927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGAATTT ATTTAAGTGT
  AAAATAAGAG TGAAGTACAA ATGAAACATC CTCTTCTCTC AGGTCCCACT GAACTGGACT
  GAACATTCGG CTGGACCTTA GCTGGGCCGT CTCCAACTAT GTTAAATGAC GCTGGTAAAC
  GTGGTGCTGT CTCGTCTCAT TGCAAACCAT TTGCTCAACT TTTTAGGGTT CATCACTGAA
  R
  TCGCCTCCAA AAAATGCTAA AGTGTATCTG AGGCTTTTCC CGATAGTGAT CAGCACAATT
  GAGAATAAAT CAAGACCTTC TTTTCCTGGC GAAATAAATT CAGTGTCACA AGTCTGGGTC
  AGAAACTAGG TTTACGACAG GGCGTCCCGG ATGTCTCTGC AGCTTCCTCT TTGCATCAGC
  TGCCAGAATC CAGTCGACTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8812941	WI_WGS_3_132294597	WI	MOUSE	f	SNP							A		G
ss51638726	NES14654040	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6406731					SNP	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51638726	NES14654040	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131513927 () rs orientation: forward

Symbol	Name	Function Class
Rr585382	regulatory region 585382	61 bp proximal