rs6406682 SNP Detail

Summary

• ID
  rs6406682
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131513892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTGCTTT GTTGAAGTCA
  GTTTCCTGCT TGCGAATTTG AATTTATTTA AGTGTAAAAT AAGAGTGAAG TACAAATGAA
  ACATCCTCTT CTCTCAGGTC CCACTGAACT GGACTGAACA TTCGGCTGGA CCTTAGCTGG
  GCCGTCTCCA ACTATGTTAA ATGACGCTGG TAAACGTGGT GCTGTCTCGT CTCATTGCAA
  R
  CCATTTGCTC AACTTTTTAG GGTTCATCAC TGAAATCGCC TCCAAAAAAT GCTAAAGTGT
  ATCTGAGGCT TTTCCCGATA GTGATCAGCA CAATTGAGAA TAAATCAAGA CCTTCTTTTC
  CTGGCGAAAT AAATTCAGTG TCACAAGTCT GGGTCAGAAA CTAGGTTTAC GACAGGGCGT
  CCCGGATGTC TCTGCAGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8812892	WI_WGS_3_132294562	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6406682					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131513892 () rs orientation: forward

Symbol	Name	Function Class
Rr585382	regulatory region 585382	96 bp proximal