rs6406665 SNP Detail

Summary

• ID
  rs6406665
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131513880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAGAAAC AGATTTTGCT
  TTGTTGAAGT CAGTTTCCTG CTTGCGAATT TGAATTTATT TAAGTGTAAA ATAAGAGTGA
  AGTACAAATG AAACATCCTC TTCTCTCAGG TCCCACTGAA CTGGACTGAA CATTCGGCTG
  GACCTTAGCT GGGCCGTCTC CAACTATGTT AAATGACGCT GGTAAACGTG GTGCTGTCTC
  R
  TCTCATTGCA AACCATTTGC TCAACTTTTT AGGGTTCATC ACTGAAATCG CCTCCAAAAA
  ATGCTAAAGT GTATCTGAGG CTTTTCCCGA TAGTGATCAG CACAATTGAG AATAAATCAA
  GACCTTCTTT TCCTGGCGAA ATAAATTCAG TGTCACAAGT CTGGGTCAGA AACTAGGTTT
  ACGACAGGGC GTCCCGGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8812875	WI_WGS_3_132294550	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6406665					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131513880 () rs orientation: forward

Symbol	Name	Function Class
Rr585382	regulatory region 585382	108 bp proximal