rs6406624 SNP Detail

Summary

• ID
  rs6406624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131513864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTATTTTT TTTTTTTTAG
  AGAAACAGAT TTTGCTTTGT TGAAGTCAGT TTCCTGCTTG CGAATTTGAA TTTATTTAAG
  TGTAAAATAA GAGTGAAGTA CAAATGAAAC ATCCTCTTCT CTCAGGTCCC ACTGAACTGG
  ACTGAACATT CGGCTGGACC TTAGCTGGGC CGTCTCCAAC TATGTTAAAT GACGCTGGTA
  R
  ACGTGGTGCT GTCTCGTCTC ATTGCAAACC ATTTGCTCAA CTTTTTAGGG TTCATCACTG
  AAATCGCCTC CAAAAAATGC TAAAGTGTAT CTGAGGCTTT TCCCGATAGT GATCAGCACA
  ATTGAGAATA AATCAAGACC TTCTTTTCCT GGCGAAATAA ATTCAGTGTC ACAAGTCTGG
  GTCAGAAACT AGGTTTACGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8812834	WI_WGS_3_132294534	WI	MOUSE	f	SNP							A		G
ss51638729	NES14654039	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6406624					SNP	A	A	A	A	A	A	A	G	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51638729	NES14654039	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131513864 () rs orientation: forward

Symbol	Name	Function Class
Rr585382	regulatory region 585382	124 bp proximal