rs6406566 SNP Detail

Summary

• ID
  rs6406566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9617583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTTTCTC AGGGGTAGAC
  ACACTTCACA TGCTCTTCCG CTTTGCAATG GCGTCCCTCT GCAACTGCAA GTAGACGTCT
  CCACTGTGGG CTGTACTTTG TTTACACTGT ATGCAGAGGA AGGCACAGCC ATTAACTGGA
  CAGGAGGCAG CTCTGAGGTC CAACCCACTG GTGCTGAACT GCAAGTGCAG CTCTTCCTGA
  Y
  GGACAGCAGC GCTCGCTCCC TTCAGCTCTG TATCAGCTTC CTGTTAACTT GACCCAAGCT
  GGAGTCATCT CGGTGGAGAG AAAGCCTCCA TCAGACTGGT CTGCACAGCT CAGTGAAGCA
  ACGTCTTGAT CAATGACTGA AGTGGAGGGT CCAGCCCACT CTGGGTGGTG CCATCCTTGG
  ACAGACAGTT CGGGGTTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8812776	WI_WGS_3_9588985	WI	MOUSE	f	SNP							T		C
ss49557693	NES12889060	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6406566					SNP	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49557693	NES12889060	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9617583 () rs orientation: forward

Symbol	Name	Function Class
Gm65791	predicted gene, 65791	1193 bp upstream
Rr573443	regulatory region 573443	1222 bp distal
Rr573444	regulatory region 573444	within coordinates
Zfp704	zinc finger protein 704	Intron