rs6405570 SNP Detail

Summary

• ID
  rs6405570
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30068508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TTTGGGCACT
  TTCTATCAAT ACAATGCAGA GATGACATTG GGTGAAAGAA TTTGGATAGA GGATGGCAAA
  ATATAAGAAT CCATGTGTTT ATTTGTAGAT AAATTTGGAA AAAAAAATGT TAAACCCACC
  GCTTAATTGA GAATAAATGC TTTTGATGAG AAAACTCCAT TTATAAAAGC AAATAGAAAG
  ATACAGCTCA CCTACCCACC AAGAGAAGAC AGAAACACCT CCAGGACAAC CACCCCCAAC
  Y
  CCCACTAGGC AAGAGAACTG CCTCTGAGCT AAATCGCCAG CCCTCAGATC CAATTTATTC
  TCAACTCAAC AATGGAAAAT TTAGTAAAAT GCCTAGGTCT AGGAACAGGT ACTTGGGAGG
  GGTGGAGCCA GCTCACAGGC TTAGAATGTG TGCTGACATT AAACTTTTAT CTATGAATCA
  GGACTCACAG TACCACCCAC ATTTCTTTCT CTCCAAGGGC AAGTTAATGT GAAAATCCAG
  TAGATCTTTA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8811778	WI_WGS_3_29827408	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6405570					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30068508 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13032	CpG island 13032	1766 bp distal
D3Mit46	DNA segment, Chr 3, Massachusetts Institute of Technology 46	755 bp distal
D3Mit46.1	DNA segment, Chr 3, Massachusetts Institute of Technology 46.1	634 bp distal
D3Mit46.3	DNA segment, Chr 3, Massachusetts Institute of Technology 46.3	884 bp distal
Mecom	MDS1 and EVI1 complex locus	Intron
Rr574701	regulatory region 574701	1970 bp distal
Rr574702	regulatory region 574702	1214 bp distal
Rr574703	regulatory region 574703	618 bp distal
Rr574704	regulatory region 574704	804 bp proximal
Rr574705	regulatory region 574705	1069 bp proximal
Tssr32873	transcription start site region 32873	1448 bp upstream
Tssr32874	transcription start site region 32874	1339 bp upstream
Tssr32875	transcription start site region 32875	1323 bp upstream
Tssr32876	transcription start site region 32876	1210 bp upstream
Tssr32877	transcription start site region 32877	1185 bp upstream
Tssr32878	transcription start site region 32878	1113 bp upstream
Tssr32879	transcription start site region 32879	1099 bp upstream
Tssr32880	transcription start site region 32880	1019 bp upstream
Tssr32881	transcription start site region 32881	990 bp upstream
Tssr32882	transcription start site region 32882	960 bp upstream
Tssr32883	transcription start site region 32883	28 bp downstream