rs6405441 SNP Detail

Summary

• ID
  rs6405441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69278999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TGTTTGTTGC
  TGTCACTGAT GTTGCTGCGA GTGTTTTTGT ATTGACTTCT TGAGTATAAA TGAAAGAGAT
  ATTAGGGATA TATTTGTATG GATGAAGTTA TCAGCCAGTA ATATATGCAT ACTTTAAGCT
  TAACTAGCTA TCACTAAATT NTTCCCCACA TTGATTGAAT TAAATTATCA TTCCATTACA
  GTGTATCACA GGTATNGGGC NGAGGTANTG TGTGAGAGGT GACATTGCCA GTACCTTGTT
  Y
  CTCTCTAAGT TTTGAACCCT TGGTATGTAA GTGTTGGTGA TACTGAGATC TGAACCAGGG
  AATTTAACCG TAGGAAGTCT TGGTGAACCT GGCTTGTTCT TTGAGAGCCT ACCTGTCAGT
  GTTAGTTGGT TTAATGGCAT GTTGCTATTC CTGAAAGCTG TACCCTTTGA TTTGTTTTGT
  TGCTGCTTCT AACCAGTCCG AATCATTTTA TTTTTCATTT ATTGCTACAA CTAAAAACAA
  ATAAATGAAA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8811648	WI_WGS_3_69979052	WI	MOUSE	f	SNP						C		T
ss47006096	NES10766396	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		C		C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6405441					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47006096	NES10766396	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69278999 () rs orientation: forward

Symbol	Name	Function Class
Ppm1l	protein phosphatase 1 (formerly 2C)-like	Intron
Rr578170	regulatory region 578170	1251 bp proximal
Rr578171	regulatory region 578171	1947 bp proximal