rs6405377 SNP Detail

Summary

• ID
  rs6405377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69278966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TTTTTCTGAT
  AATGGATGTG TCAGTAGTTT TCCTGTTTGT TGCTGTCACT GATGTTGCTG CGAGTGTTTT
  TGTATTGACT TCTTGAGTAT AAATGAAAGA GATATTAGGG ATATATTTGT ATGGATGAAG
  TTATCAGCCA GTAATATATG CATACTTTAA GCTTAACTAG CTATCACTAA ATTNTTCCCC
  ACATTGATTG AATTAAATTA TCATTCCATT ACAGTGTATC ACAGGTATNG GGCNGAGGTA
  Y
  TGTGTGAGAG GTGACATTGC CAGTACCTTG TTNCTCTCTA AGTTTTGAAC CCTTGGTATG
  TAAGTGTTGG TGATACTGAG ATCTGAACCA GGGAATTTAA CCGTAGGAAG TCTTGGTGAA
  CCTGGCTTGT TCTTTGAGAG CCTACCTGTC AGTGTTAGTT GGTTTAATGG CATGTTGCTA
  TTCCTGAAAG CTGTACCCTT TGATTTGTTT TGTTGCTGCT TCTAACCAGT CCGAATCATT
  TTATTTTTCA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8811584	WI_WGS_3_69979019	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6405377					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69278966 () rs orientation: forward

Symbol	Name	Function Class
Ppm1l	protein phosphatase 1 (formerly 2C)-like	Intron
Rr578170	regulatory region 578170	1284 bp proximal
Rr578171	regulatory region 578171	1980 bp proximal