rs6403477 SNP Detail

Summary

• ID
  rs6403477
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53770160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA ACAAAAAACA ACAAAAAAAA
  M
  CTAGACTACA GACTTTCGTC TGCAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8809680	WI_WGS_3_54326262	WI	MOUSE	f	SNP	C	A
ss320769925	CHEV_3_53666661	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6403477					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53770160 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13168	CpG island 13168	625 bp proximal
Rr367439	regulatory region 367439	1198 bp upstream
Rr576756	regulatory region 576756	413 bp proximal
Rr576757	regulatory region 576757	1017 bp proximal
Tssr33277	transcription start site region 33277	1025 bp downstream
Ufm1	ubiquitin-fold modifier 1	Intron