rs6402976 SNP Detail

Summary

• ID
  rs6402976
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108702825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTATGGGT GTTTTGCCTA
  CATGTAAGGC TGTGCACCAT GTGCATGCAG GGCCTGTGGA GGCCAGAGAA GGGTGCTGGA
  TCCTGTGGGA CAGGAGTTAC GGATGGTTGT GGGTGCTGGG ATGAACCTGG GTCCTCTGGA
  AGATCAGTGT ATCCCTAAAT CCTCAGTGAT CAGTGGAGGA TGGAAGGGAC ATGCCTCAAG
  W
  GTCTGACAAT GTCTGCCCAG ACAATTGGCT GACTGCAACT ACACAGGCAC AAACAACCAC
  TAAGCCAAAC TGAAAAACTG AAAAACTCAA AAGACTGAAG TGGCCATTCA CAGCAAGAGA
  GAAAGCCAAC AGTTTAAGTC TACACAAATT GCTACCACGA TGGGCTAGAG AGATGGCTTA
  GAGCGTCAGT ATTGCTCTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8809177	WI_WGS_3_109290023	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6402976					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108702825 () rs orientation: forward

Symbol	Name	Function Class
Gm66359	predicted gene, 66359	432 bp upstream
Rr583317	regulatory region 583317	160 bp proximal
Rr583318	regulatory region 583318	443 bp proximal
Stxbp3	syntaxin binding protein 3	Intron