rs6399743 SNP Detail

Summary

• ID
  rs6399743
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:151524956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAAGTGA GCCTCAGCTT
  CTTGCTCCAG CTGCCATGTC TACTGCTTGC TGCCATGCCT CCAAACTATG ACAGCCTCTC
  TAGAACTGTA AGCCACATAA ACACTTCCTT CGGTAAGTTG TTTTGGCCAT GGTGTTTGTC
  TTTGTCGGTT ACTACTGCTG TGATGAAACA CCATGACTAA AGAAGCCCAG AAGGAGAGGG
  Y
  TTATCTGGCT TATGCTTCCA CAACATAGTT CATCATTAAA TGAAATGAGG GCAGTAACCT
  AGGGGCAAGA GCTGATGTAG AGGCCATGGA GGAGTACTGA TTGCTAGCTT GCTCAATCGA
  CTTTTTTTAT ATAAGCCAGG AACAATAGCC CAGGGGTGAT GCCGCCCACA GTGGACTTGG
  GCCTCCCACA TCATTACTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8805935	WI_WGS_2_152479363	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6399743					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151524956 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr567184	regulatory region 567184			395 bp distal
Rr567185	regulatory region 567185			466 bp distal
Rr567186	regulatory region 567186			311 bp distal
Tmem74bos	transmembrane 74B, opposite strand			Intron
				Noncoding-Transcript-Variant