rs6398524 SNP Detail

Summary

• ID
  rs6398524
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:33029008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATGCTCC TGCATACTGA
  GGCTCTTCTA ACCTCACTTC CTCGGCTACT TTCAGTATAA CCACATAAGC ACTGTTAAAA
  GGCACCAGTG GTAATCCTGT ACATTTGTAT TTATAAAAAC AAATATATAT TTGCAAAGCA
  CCTTACCTAT ATGGCTTCCC TTTCACACTT AACCCCACCC CGTCATTACT GCCCTCTTCC
  S
  GAATCGAGTG CCTTTCTGAC CGCTCACTGC ACACATTTCA GAGGACTCTA GCAAGTCTTA
  TTTCTCCTCC CCTCCTCGCA GGGCTTTCTC TGCCTCTGCT GCTGGGCCTT GGGGCTTCAG
  GTCTCCGACT AGGTTCTTTG CCCTCACTCT CTTATCATCC ATGTGCTCAT GGTATTCCTA
  GCAAATGACT TCTGATTTAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8804714	WI_WGS_6_33211507	WI	MOUSE	f	SNP							C		G
ss60876159	NES15979035	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		G		C	C	C	G	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6398524					SNP	C	C	C	C	C	C	C	G	G	C	C	C	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60876159	NES15979035	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33029008 () rs orientation: forward

Symbol	Name	Function Class
Chchd3	coiled-coil-helix-coiled-coil-helix domain containing 3	Intron
Rr628161	regulatory region 628161	65 bp distal