rs6398446 SNP Detail

Summary

• ID
  rs6398446
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83427612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTGGGT GCCCTCTGGA
  CTCATATCCA CACCTATTAG AAATTCTGGT GATGGCCCTA CTATATGCCA CAACACTACA
  AGCCAGCATC CGAGGACAGA GATAAAAATC AGGGGACATT TTATAAGAAG GCTACAACCT
  AGGCAATTAA CCCATTCCTC TGTAAACCTT TACTGCATCC TTGGTGAAGA TAACTCTACA
  W
  CCTAATCCCA TAAAGGCCCC ATGTCTTAAT GATTCTTTCA ATGATAAGCA GATGCTAAGG
  CGAGTTGTAG AGGAGACATT CAAGCCATGA AGTTAAAGTA AGAACTAAAT GTTCTATAAT
  TGAAGAGGAT GAAAAGAACT TTGACAGAAT GACCTGGGCT TTCATCTTTC AGTTTGGCCT
  CTGAGCTCTG TCCTTTTCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8804635	WI_WGS_3_84219002	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6398446					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83427612 () rs orientation: forward

Symbol	Name	Function Class
Rr578867	regulatory region 578867	1742 bp distal