rs6397888 SNP Detail

Summary

• ID
  rs6397888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:33028909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCAGATA TCCCTCTTCA
  ACATCGCACT CAACATCTGA TAAGACAAGG AAGTGAAAGT AGGCACTGAG GACCTGGGGC
  TCTGGGGTCA GGTAACAGGG TAATGCTCCT GCATACTGAG GCTCTTCTAA CCTCACTTCC
  TCGGCTACTT TCAGTATAAC CACATAAGCA CTGTTAAAAG GCACCAGTGG TAATCCTGTA
  Y
  ATTTGTATTT ATAAAAACAA ATATATATTT GCAAAGCACC TTACCTATAT GGCTTCCCTT
  TCACACTTAA CCCCACCCCG TCATTACTGC CCTCTTCCCG AATCGAGTGC CTTTCTGACC
  GCTCACTGCA CACATTTCAG AGGACTCTAG CAAGTCTTAT TTCTCCTCCC CTCCTCGCAG
  GGCTTTCTCT GCCTCTGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8804075	WI_WGS_6_33211408	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6397888					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33028909 () rs orientation: forward

Symbol	Name	Function Class
Chchd3	coiled-coil-helix-coiled-coil-helix domain containing 3	Intron
Rr628160	regulatory region 628160	1966 bp distal
Rr628161	regulatory region 628161	within coordinates