rs6397505 SNP Detail

Summary

• ID
  rs6397505
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:33028893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGTTTCA AGGTCACTAT
  CAGATATCCC TCTTCAACAT CGCACTCAAC ATCTGATAAG ACAAGGAAGT GAAAGTAGGC
  ACTGAGGACC TGGGGCTCTG GGGTCAGGTA ACAGGGTAAT GCTCCTGCAT ACTGAGGCTC
  TTCTAACCTC ACTTCCTCGG CTACTTTCAG TATAACCACA TAAGCACTGT TAAAAGGCAC
  Y
  AGTGGTAATC CTGTACATTT GTATTTATAA AAACAAATAT ATATTTGCAA AGCACCTTAC
  CTATATGGCT TCCCTTTCAC ACTTAACCCC ACCCCGTCAT TACTGCCCTC TTCCCGAATC
  GAGTGCCTTT CTGACCGCTC ACTGCACACA TTTCAGAGGA CTCTAGCAAG TCTTATTTCT
  CCTCCCCTCC TCGCAGGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8803692	WI_WGS_6_33211392	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6397505					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33028893 () rs orientation: forward

Symbol	Name	Function Class
Chchd3	coiled-coil-helix-coiled-coil-helix domain containing 3	Intron
Rr628160	regulatory region 628160	1950 bp distal
Rr628161	regulatory region 628161	within coordinates