rs6396817 SNP Detail

Summary

• ID
  rs6396817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:6102988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTTATTC TCCATCCTCT
  TTCTTCATGG GAGACAGACT CCACACAGAG GCTAAGTAAG AAGCCTGTTC CACAGCACTG
  TCTGCAGCAA TCCGCCCATG GTTTTTCATG TTCAGTATCA AGTCTCACAG CAGGTTCTAT
  CTAAGCCTTT CATATTTAGC TTTCCTCTCT AGTAACCATA CTGTTCAACC TTTATAGAGG
  R
  AGCCCTTCGT GCAACAACAC CGGGTGGGTG GCGTCACACC TCCTACTCTG CCGATGGGTC
  ATGAGTACCA GGCTCTCTGG AGAAGCCAGT GAGTGATCAG TGGTTGGGCT GATCAAGCAT
  GGAAGCTGTG GCCAACGCAA GTGTTCTTCT AACCATGCTA CACAAGTCAG GCAGGTCCAT
  CAAAGCAACA GGGGCTCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8803002	WI_WGS_6_5829242	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6396817					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:6102988 () rs orientation: forward

Symbol	Name	Function Class
Rr626202	regulatory region 626202	1486 bp distal
Rr626203	regulatory region 626203	978 bp distal
Slc25a13	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	Intron
Tssr59763	transcription start site region 59763	1790 bp downstream