rs6396272 SNP Detail

Summary

• ID
  rs6396272
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4655931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATAAAAG GGGAAAGGGA
  AAGCATGAAA AGTCATGAAA AAAGGAAAAT CCATATTTTA AGTATTCTAT TCTGCAAAGC
  CTTTTGACAT GAGGGTTCCT CTAAAAGCTG GCTGCCTCTT TTCTCTCTTG GCATACAGCC
  AGAGAAGTAT TCTTTGGAGA GGAATATGTT GTCTCTAGAA CTTAAAAAGA AAAAAGCTTA
  R
  GCAAGCTTGT CTTTCTTATT TGCAGTAGGA GATATTAGGT GCAGTGCTGT ATTCTTTATT
  TCAGTGAACA CATCTGGGCA CAGTATTCGT TGCTGGACTT CTAAGTTACA CTGAATAACC
  TGGCCTGTTT TTAAAGGGCA TTACCCATAG CCCAGAGCAT GTGTATCTTA CCAAAGTCTG
  AGCAGAGTTC TGTCCTCAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8802457	WI_WGS_6_4361365	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6396272					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4655931 () rs orientation: forward

Symbol	Name	Function Class
Gm38761	predicted gene, 38761	within coordinates
Rr626045	regulatory region 626045	1803 bp distal