rs6396221 SNP Detail

Summary

• ID
  rs6396221
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148644691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACATTAGT CAAGAAAGCA
  CAATTAACCA AACTAATTAA AGTATCATTC TGTGAGCCAA GTTCTTTAAT TTCAAGAATA
  GTAACACTGT TACGAGTGCT TCAAGCATAA ATGAATTTGA ATAGTTCTGA GCAACCGACT
  GTGATATACA TTCAAAGAGA ATAAAATTTT AGATTCTATC TTCAAATGGC ATAGTACTAT
  R
  TTACAAAAAA AATTTCTCAA AATAAATGAC AGGAAGAAAC TCAAAACAAT TATATCATGT
  AGTAATTTTT TTCAATAAGA TCAAAAAAAA GAACAAGAAA CACCCTAGGA AGAAGCAAGA
  TTCGCTTTTA ACATTCCTTC ATTAACACTT GAGTTGCTTT CATGTTTCTG CAATCCTTGA
  AATTTTCACC AGTTATCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8802406	WI_WGS_3_149474949	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6396221					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148644691 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587231	regulatory region 587231	269 bp proximal