rs6396198 SNP Detail

Summary

• ID
  rs6396198
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:174501185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAA GAGCAAGCTG GCTAGTTAGA
  S
  TAGCCAGTTA GTCATCCCAG AGACC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8802383	WI_WGS_1_175986253	WI	MOUSE	f	SNP		G	C
ss146292461	ENSMUSSNP6073872	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
ss320143630	CHEV_1_176603750	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6396198					SNP	C	G	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174501185 () rs orientation: forward

Symbol	Name	Function Class
Fmn2	formin 2	Intron
Rr423785	regulatory region 423785	1132 bp proximal
Rr423786	regulatory region 423786	1205 bp proximal