rs6396024 SNP Detail

Summary

• ID
  rs6396024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107159548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGGCAGA GAGGCTCCAA
  GGTGCTCTGC ACCTCTGATG TTCAGTTTAC TTTTTGGCCA CACAGGATGT TGAAACCCAA
  GGCCTCAAAC ACGCAGGGCC ACATACTGAG CTGCATCGTT GGCATCTGTG CATTCGCTGG
  AACACAGCCG TGTGTTCACT TTTGAGTTTT CTGGTACTCA AGTAAAGAGA GAGGTGAGAG
  Y
  GAGCAGTTAT CATTTCATAA CTTGGGGCCA GCAAGGTGGC TTGGAGGTAA GGGGGCTTGC
  AGCCAAGCAC GGAGCCACGT GGTGGGAGGA GAAAACCTGC TCCTTGGAGT TATCCCAGGA
  CCTCCACATG CGCACTGTGA CATATGCGTG TATACACTTA AACATACACA CAAAATAAAT
  TAAAAAATAA GTAAGTAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8802209	WI_WGS_4_105029537	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6396024					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107159548 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dio1	deiodinase, iodothyronine, type I			Intron
				Noncoding-Transcript-Variant
Rr596967	regulatory region 596967			292 bp proximal
Rr596968	regulatory region 596968			1254 bp proximal