rs6396019 SNP Detail

Summary

• ID
  rs6396019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107159542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGGAATG GGCAGAGAGG
  CTCCAAGGTG CTCTGCACCT CTGATGTTCA GTTTACTTTT TGGCCACACA GGATGTTGAA
  ACCCAAGGCC TCAAACACGC AGGGCCACAT ACTGAGCTGC ATCGTTGGCA TCTGTGCATT
  CGCTGGAACA CAGCCGTGTG TTCACTTTTG AGTTTTCTGG TACTCAAGTA AAGAGAGAGG
  Y
  GAGAGCGAGC AGTTATCATT TCATAACTTG GGGCCAGCAA GGTGGCTTGG AGGTAAGGGG
  GCTTGCAGCC AAGCACGGAG CCACGTGGTG GGAGGAGAAA ACCTGCTCCT TGGAGTTATC
  CCAGGACCTC CACATGCGCA CTGTGACATA TGCGTGTATA CACTTAAACA TACACACAAA
  ATAAATTAAA AAATAAGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8802204	WI_WGS_4_105029531	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6396019					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107159542 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dio1	deiodinase, iodothyronine, type I			Intron
				Noncoding-Transcript-Variant
Rr596967	regulatory region 596967			298 bp proximal
Rr596968	regulatory region 596968			1260 bp proximal