rs6395907 SNP Detail

Summary

• ID
  rs6395907
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5509081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTTTGTA ACCATCCTGG
  CAAGACTGAA AATATTCTAG AGACACTGGT CCCCTCCTTT TGACTCTCAG ACGATTGAAA
  CCATGATCCC CAAGGAATTG GGATTTCTGC TGGAATCGGT TGGGACAAAA AAGAAGCTGA
  ACTCCAGTGC CAGCCATAGG GATATATCTC CCAGAAAGAG ATTTCGCACA GTTCTGAAGA
  K
  GTTTTTGGAC CACCTGGCAG GCAAGACAGG GGCTGGCTCA AAATGAGGAC CCACCCAAAC
  TTGATTATGC TCTTATTTCT GTTTATACCC AGAGATAGAC TTGGGAGGGG GTACTAGACT
  GCTTGACAAT GTGGGCAATG GAATACGTCT TCCTCTGTTT TTCTTGTCTC TGTAATTACC
  CTGTTGAGGA TTGTGGAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8802090	WI_WGS_6_5233960	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6395907					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5509081 () rs orientation: forward

Symbol	Name	Function Class
Rr406959	regulatory region 406959	within coordinates
Rr626154	regulatory region 626154	871 bp distal
Rr626155	regulatory region 626155	151 bp proximal