rs6395540 SNP Detail

Summary

• ID
  rs6395540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151277955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGGAAG AGGAAGCCAG
  GCCTATGCCC CCTGAATCAG AAGCAGAGTG GGGAACGCAT GATCGTCCTG GTTTCGTTCA
  GTTCTGAGGC AGCACAGAAA GGGGTGCTGC TGCATTCAGT GTGGGCCTTC ACAGCTCAGC
  TGTCACCCTA GTTAAGGAAA TCCCTCCCAG GCACCACCAC AGGTCACTCA GACAAGGACC
  Y
  CCATGAGACT CCCTTCTCAG GTGATCCGGG ACCTGCCAAG CTGATGATTG AAAATTACCC
  TCACCCCTGG CTTTGTCCCA GCCTCTGCTC AGCACACTCC ATACACTATT GTCCTTGGGC
  TGTTGTGGAG GTCTGTTCTG CGGCCACACC ATGGCACGCT CACCGAGAGC TTAGAACACC
  TGTCATCACT CCCAGGAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8801722	WI_WGS_4_146589893	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6395540					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151277955 () rs orientation: forward

Symbol	Name	Function Class
Camta1	calmodulin binding transcription activator 1	Intron
Rr605535	regulatory region 605535	591 bp proximal
Rr605536	regulatory region 605536	601 bp proximal