rs6395517 SNP Detail

Summary

• ID
  rs6395517
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107159449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCATGGGA TTTGAAGCAG
  TTTGCATACA TGTTAAAATA GAAAATAATA ACCAGGGAAA GAGATCGTGG CCTTCTGAAA
  AGCACAGAGC AGGACAGGGA ATGGGCAGAG AGGCTCCAAG GTGCTCTGCA CCTCTGATGT
  TCAGTTTACT TTTTGGCCAC ACAGGATGTT GAAACCCAAG GCCTCAAACA CGCAGGGCCA
  S
  ATACTGAGCT GCATCGTTGG CATCTGTGCA TTCGCTGGAA CACAGCCGTG TGTTCACTTT
  TGAGTTTTCT GGTACTCAAG TAAAGAGAGA GGTGAGAGCG AGCAGTTATC ATTTCATAAC
  TTGGGGCCAG CAAGGTGGCT TGGAGGTAAG GGGGCTTGCA GCCAAGCACG GAGCCACGTG
  GTGGGAGGAG AAAACCTGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8801699	WI_WGS_4_105029438	WI	MOUSE	f	SNP							C		G
ss38286073	NES09493461	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6395517					SNP	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38286073	NES09493461	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107159449 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dio1	deiodinase, iodothyronine, type I			Intron
				Noncoding-Transcript-Variant
Rr596966	regulatory region 596966			1955 bp distal
Rr596967	regulatory region 596967			391 bp proximal
Rr596968	regulatory region 596968			1353 bp proximal