rs6395512 SNP Detail

Summary

• ID
  rs6395512
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151277938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGACACA GTGCCACGAG
  CAGGAAGAGG AAGCCAGGCC TATGCCCCCT GAATCAGAAG CAGAGTGGGG AACGCATGAT
  CGTCCTGGTT TCGTTCAGTT CTGAGGCAGC ACAGAAAGGG GTGCTGCTGC ATTCAGTGTG
  GGCCTTCACA GCTCAGCTGT CACCCTAGTT AAGGAAATCC CTCCCAGGCA CCACCACAGG
  Y
  CACTCAGACA AGGACCCCCA TGAGACTCCC TTCTCAGGTG ATCCGGGACC TGCCAAGCTG
  ATGATTGAAA ATTACCCTCA CCCCTGGCTT TGTCCCAGCC TCTGCTCAGC ACACTCCATA
  CACTATTGTC CTTGGGCTGT TGTGGAGGTC TGTTCTGCGG CCACACCATG GCACGCTCAC
  CGAGAGCTTA GAACACCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8801694	WI_WGS_4_146589876	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6395512					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151277938 () rs orientation: forward

Symbol	Name	Function Class
Camta1	calmodulin binding transcription activator 1	Intron
Rr605535	regulatory region 605535	608 bp proximal
Rr605536	regulatory region 605536	618 bp proximal